Friday, 15 October 2021

MOTILITY DETERMINATION- SOFT AGAR METHOD

 

MOTILITY DETERMINATION- SOFT AGAR METHOD

AIM: To observe the motility of the organism by soft agar method.

PRINCIPLE: In semi-solid agar media, motile bacteria ‘swarm’ and give a diffuse spreading growth that is easily recognized by the naked eye. The medium mainly used for this purpose is SIM medium (Sulphide Indole Motility medium) which is a combination differential medium that tests three different parameters, Sulfur Reduction, Indole Production and Motility. This media has a very soft consistency that allows motile bacteria to migrate readily through them causing cloudiness. The inoculum is stabbed into the center of a semisolid agar deep. Bacterial motility is evident by a diffuse zone of growth extending out from the line of inoculation. Some organisms grow throughout the entire medium, whereas others show small areas or nodules that grow out from the line of inoculation. The non-motile bacteria will only grow in the soft agar tube and only the area where they are inoculated.

MATERIALS REQUIRED: SIM Medium, Bacterial culture, Inoculation needle, Test tubes

PROCEDURE:

  1. Touch a straight needle to a colony of a young (18- to 24-hour) culture growing on agar medium.
  2. Stab once to a depth of only 1/3 to ½ inch in the middle of the tube. Be sure to keep the needle in the same line it entered as it is removed from the medium.
  3. Incubate at 35°-37°C and examine daily for up to 7 days.
  4. Observe for a diffuse zone of growth flaring out from the line of inoculation.

RESULTS:



  • Positive: Diffuse, hazy growths that spread throughout the medium rendering it slightly opaque.
  • Negative: Growth that is confined to the stab-line, with sharply defined margins and leaving the surrounding medium clearly transparent.

 

Culturing and Morphological identification of Algae

 

 

Culturing and Morphological identification of Algae

 

AIM: To culture and to study the morphology of algae from the natural habitats.

GENERAL FEATURES:

Algae include species that fall under the Division Cyanophyta, Kingdom Eubacteria. They are referred to as algae but are actually photosynthetic bacteria that appear like true algae. They are mostly single-celled organisms or aggregations of single-celled organisms (planktonic). Planktonic algae generally do not adhere together in a mass, in that you could not easily grab a handful or mass of these organisms. Some species, such as Nostoc, are gelatinous masses that can be picked up. Anabaena, Aphanizomenon, Oscillatoria and Mycrocystis often dominate plankton communities and are notorious for producing potentially toxic blooms in fresh waters. These toxins can cause death and illness in livestock; and gastroenteritis, liver damage and skin and eye irritations in humans. High numbers of blue-greens often indicate high nutrient levels in the water, although Oscillatoria can form dense accumulations in less fertile waters. Cell colour is uniform throughout (i.e. no membrane-bound coloured structures called chloroplasts) and may appear blue-green to violet, but sometimes red or green. They have very simple internal structure, no definite nucleus or intracellular membranebound organelles.

PRINCIPLE:

Algae (singular alga) encompass several groups of relatively simple living aquatic organisms that capture light energy through photosynthesis, using it to convert inorganic substances into organic matter. Algae range from single-cell organisms to multicellular organisms, some with fairly complex differentiated form and (if marine) called seaweeds. Algae are usually found in damp places or water bodies and thus are common in terrestrial as well as aquatic environments. Various algae play significant roles in aquatic ecology. Algae are used by humans in a number of ways. Because many species are aquatic and microscopic, they are cultured in clear tanks or ponds and either harvested or used to treat effluents pumped through ponds. Algae Culture Agar is recommended for the isolation and cultivation of algae from soil, water and sewage.

MATERIALS REQUIRED: Sample water, Algae culture media, Light source, Glass tank or vessel, Glass slide, Inoculation loop, Microscope, aerator.

Algae Culture Media components:

 Algae Culture Agar is recommended for the isolation and cultivation of algae from soil, water and sewage. Also for carrying stock cultures of algae used in the bioassay of algicidal chemicals. Composition**

Ingredients                              Gms / Litre

Sodium nitrate                                     1.000

Dipotassium phosphate                        0.250

Magnesium sulphate                0.513

Ammonium chloride                0.050

Calcium chloride                     0.058

Ferric chloride                                     0.003

Agar                                         15.000

Final pH ( at 25°C) 7.0±0.2

Sample collection:

Sampling of large bodies of fresh water occurred at multiple sites along the waterfront nearby our college. Collections were made for the top and bottom of the water bodies. All field samples were collected in 50 mL tubes and maintained at refrigerated condition while transferring to laboratory.

Isolation & Cultivation:

1.      The samples were first diluted to aid in the isolation process.

2.      Sterilized plastic petri dishes (100 × 15 mm) containing approximately 40 mL of agarized medium were used to plate these diluted samples.

3.      One milliliter of the diluted sample was transferred to a media plate and spread evenly across the surface.

4.      Inoculated plates were placed in a temperature-controlled greenhouse (20-25°C, approximately 27 µE/m/s) where the algae were allowed to grow for about 14 days.

5.      Grown algae cultures were streaked using sterile technique onto additional sets of nutrient media plates and placed back in the greenhouse for isolation.

6.      This streaking method was repeated until isolation into axenic unialgal cultures was achieved. Isolated algae were maintained as stock cultures and were stored on a cool, low light shelf.

Morphological identification

1.      Microalgal and cyanobacterial cultures were initially separated based on morphological examination of the colonies on an agar nutrient medium.

2.      This general classification method was only used to distinguish isolates on the most basic level. Identification of these isolates to the genus level was based on the morphology of the individual cells following microscopic examination.

3.      Place a loopful of water sample on the grease free slide and put a cover slip over it. Observe the slide under the microscopic objectives at 10x and 40x.

4.      The strains were identified using the methods similar to reported by Wehr and Sheath.

RESULT:

All of the isolates were categorized based on the morphological appearance of the culture and the microscopic cellular appearance of the isolated colonies.

 





 

 

 

Thursday, 14 October 2021

LACTOPHENOL COTTON BLUE METHOD

 

LACTOPHENOL COTTON BLUE METHOD

AIM: To stain the given fungi culture for the studying the morphology.

PRINCIPLE: Fungus is eukaryotic organism and they are classified into two main groups that is yeast and molds. Its cell wall is made up of chitin. Fungal cells have both macroscopic as well as microscopic structure. Lactophenol Cotton Blue reagent is used for staining as well as for wet mounting of fungi. The lactophenol cotton blue (LPCB) wet mount preparation is the most widely used method of staining and observing fungi and is simple to prepare. The preparation has three components: Lactic acid preserves the fungal structure and clears the tissue while phenol acts as a disinfectant and cotton blue imparts blue colouration to the fungal spores and hyphae.

MATERIALS REQUIRED: LPCB Stain, Fungi culture, Glass slide, Cover slip, Inoculation needle, Forceps.

PROCEDURE:

1) Place a drop of Lactophenol Cotton Blue reagent on a clean and dry slide. The stain imparts a blue colouration on hyphae.

2) By using a nichrome inoculating wire, carefully tease the fungal culture, into a thin preparation.

3) Place a coverslip on the preparation. Wait for about 5 minutes.

4) Observe first under microscope with low power for screening in low intensity.

RESULT: Fungal spores, hyphae, and fruiting structures stain blue while the background stains pale blue. For example, Aspergillus niger stains the hyphae and fruiting structures a delicate blue with a pale blue background.

 



SLIDE CULTURE TECHNIQUE

 

 

Morphological observation of Fungi – Slide  culture

 

AIM: To cultivate and to study the fungi morphology on the slide by following slide culture technique.

PRINCIPLE: Fungi are inoculated in small blocks of nutrition deficient agar medium like potato dextrose agar, covered with a coverslip and incubated. After incubation, the coverslip is removed from the agar block and placed on another slide to which a dye, such as lactophenol cotton blue, may be added and observed for microscopic structures. Identification is made by microscopically examining the undisturbed sporulating structures as they were arranged during growth on the agar block under the coverslip.

MATERIALS REQUIRED: Sterile Petri dish, Filter paper (9cm diameter), U-shaped glass rod, Microscope slides and coverslips (Sterile), Sabouraud’s plate with mixed culture of fungi, Sterile Sabouraud’s agar plate, Lactophenol cotton blue stain, Glass capillary tube, Scalpel, Inoculating needle, Sterile distilled water, 95% ethanol, Forceps

PROCEDURE:

1.      Cut an agar block of desired dimensions (using sterile scalpel) from a solid medium and just flip the block up onto the surface of the same agar plate. Proceed to step 4 directly in such cases.

2.      Cut a small block (range: 5×5 mm-1x1cm) of a suitable agar medium that has been previously poured into a culture dish to a depth of approximately 2 mm by using sterile scalpel blade or with a sterile test tube. 

3.      Add the agar block to the surface of the sterile microscope slide.

4.      With a right-angle wire, inoculate the four quadrants of the agar block with the organism and apply a sterile coverslip onto the surface of it.

5.      Replace the lid of the culture and allow it to incubate at 30°C for 4-7 days.

6.      After the incubation period, remove the coverslip and place it on a microscope slide containing a drop of lactophenol cotton or aniline blue.

7.      Observe microscopically for the characteristic shape and arrangement of spores.

 



 

RESULT: As fungi grow directly on the slide on a thin film of agar, there is no need to remove a portion of the fungus from a culture plate and transfer it to the slide. This reduces the chance of damage to fragile reproductive structures or spore-bearing structures of fungi.

 

CAPSULE STAINING

 

CAPSULE STAINING

AIM: To prepare a smear of an encapsulated bacterium and stain its capsule and to visualize the capsule and differentiate it from the cell body.

PRNCIPLE: Capsules stain very poorly with reagents used in simple staining and a capsule stain can be, depending on the method, a misnomer because the capsule may or may not be stained. Negative staining methods contrast a translucent, darker colored, background with stained cells but an unstained capsule. The background is formed with india ink or nigrosin or congo red. India ink is difficult to obtain nowadays; however, nigrosin is easily acquired. A positive capsule stain requires a mordant that precipitates the capsule. By counterstaining with dyes like crystal violet or methylene blue, bacterial cell wall takes up the dye. Capsules appear colourless with stained cells against dark background. Capsules are fragile and can be diminished, desiccated, distorted, or destroyed by heating. A drop of serum can be used during smearing to enhance the size of the capsule and make it more easily observed with a typical compound light microscope.

MATERIALS REQUIRED: Crystal violet or Nigrosin, Bacterial culture, Glass slides, Inoculation loop, Microscope

PROCEDURE: 

  1. Place a small drop of a negative stain on the slide. 
  2. Using sterile technique, add a loopful of bacterial culture to slide, smearing it in the dye.
  3. Use the other slide to drag the ink-cell mixture into a thin film along the first slide and let stand for 5-7 minutes.
  4. Allow to air dry (do not heat fix).
  5. Flood the smear with crystal violet stain (this will stain the cells but not the capsules) for about 1 minutes. Drain the crystal violet by tilting the slide at a 45 degree angle and let stain run off until it air dries .
  6. Examine the smear microscopically (100X) for the presence of encapsulated cells as indicated by clear zones surrounding the cells.

 

RESULT:

 Capsule: Clear halos zone against dark background.

 No Capsule: No Clear halos zone



 

 

NEGATIVE STAINING

 

NEGATIVE STAINING

AIM: To perform the negative staining for the given bacterial culture to study the morphological feature of the organism.

PRINCIPLE: Negative staining requires an acidic dye such as India Ink or Nigrosin. India Ink or Nigrosin is an acidic stain. This means that the stain readily gives up a hydrogen ion (proton) and the chromophore of the dye becomes negatively charged. Since the surface of most bacterial cells is negatively charged, the cell surface repels the stain. The glass of the slide will stain, but the bacterial cells will not. The bacteria will show up as clear spots against a dark background.

MATERIALS REQUIRED: Bacterial culture, Inoculation loop, Nigrosin or India ink, Glass slides,

PROCEDURE:

1.      Place a small drop of nigrosin close to one end of a clean slide.

2.      Using aseptic technique, place a loopful of inoculum from the bacterial culture in the drop of nigrosin and mix.

3.      Place a slide against the drop of suspended organisms at a 45° angle and allow the drop to spread along the edge of the applied slide.

4.      Push the slide away from the drop of suspended organisms to form a thin smear. Air-dry.

5.      Examine the slides under oil immersion.

RESULT:  When viewed with the microscope the bacterial cells appear light against the dark surrounding background.



ACID FAST STAINING

 

ACID FAST STAINING

AIM: To perform Acid Fast staining for the given bacterial culture

PRINCIPLE:

When the smear is stained with carbol fuchsin, it solubilizes the lipoidal material present in the Mycobacterial cell wall but by the application of heat, carbol fuchsin further penetrates through lipoidal wall and enters into cytoplasm. Then after all cell appears red. Then the smear is decolorized with decolorizing agent (3% HCL in 95% alcohol) but the acid fast cells are resistant due to the presence of large amount of lipoidal material in their cell wall which prevents the penetration of decolorizing solution. The non-acid fast organism lack the lipoidal material in their cell wall due to which they are easily decolorized, leaving the cells colorless. Then the smear is stained with counterstain, methylene blue. Only decolorized cells absorb the counter stain and take its color and appears blue while acid-fast cells retain the red color.

MATERIALS REQUIRED:

Bacterial culture, Glass slides, Inoculation loop, Bunsen burner, Microscope

PROCEDURE: Smear Preparation

  1. Add one loopful of sterile water to a microscope slide.
  2. Make a heavy smear of given bacterial culture. Mix thoroughly with your loop.

3. Air dry and heat fix.

4. Cover the smear with carbolfuchsin dye. Place a piece of paper towel on top of the dye. Be sure the paper towel is saturated with the dye.

5.  Dry heat for 2 minutes.

6   Cool and rinse with water. Decolorize with acid-alcohol for 15-20 seconds.

7.  Wash the top and bottom of slide with water and clean the slide bottom well.

8.  Counterstain with Methylene Blue for 30 seconds to 1 minute.

9. Wash and blot the slide with bibulous paper. Focus 10X - then use oil immersion. 

RESULT: Acid fast: Bright red to intensive purple, Red, straight or slightly curved rods, occurring singly or in small groups, may appear beaded Non-acid fast: Blue color.

Mycobacterium tuberculosis visualization using the Ziehl–Neelsen stain.

Pure Culture Techniques

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